Introduction
Pediatric gastroenteritis is a common illness that accounts for many visits to the emergency department (ED). Gastroenteritis refers to a condition of inflammation of the stomach or intestines that is manifested as nausea, vomiting, or diarrhea, and is considered
acute when present for less than two weeks. By definition, the diagnosis of gastroenteritis should be supported by historical components of both vomiting and diarrhea. While often a benign and self-limited illness, there can be severe morbidity and
mortality associated with gastroenteritis.
Gastroenteritis can be due to viral, bacterial, or parasitic pathogens, most often transmitted via the fecal-oral route or via contaminated food or water. The most prevalent viral cause of gastroenteritis in children worldwide is rotavirus. Rotavirus has
been on the decline due to increasing vaccination rates, and the most common viral etiology for gastroenteritis in the United States is now norovirus. Enteric adenoviruses are also quite common.
The most common bacterial pathogen in developed countries is Campylobacter jejuni and other common pathogens (in order of prevalence) include Staphylococcus (S.) aureus, Salmonella, Clostridium (C.) perfringens, Shiga toxin producing E. coli (STEC), Shigella,
Yersinia enterocolitica, non-cholera Vibrio species, and enterotoxigenic Escherichia coli. C. perfringens, Bacillus cereus, and S. aureus all cause illness via preformed toxins and are thus responsible for a more rapid onset of symptoms. Preformed
toxins typically cause self-limited illness that lasts 24-48 hours. While C. difficile is considered the most common cause of antibiotic-induced diarrhea in adults it has historically been less common in pediatric patients. Of note, community-associated
C. difficile infections have been on the rise in pediatric patients and should be considered in some cases.
Parasitic causes of acute gastroenteritis may be due to Cryptosporidium parvum, Entamoeba histolytica and Giardia lamblia. Specific risk factors for parasitic gastroenteritis include travel to endemic areas, ingestion of unfiltered water, or immunocompromised
status. Fungal gastronteritis is incredibly uncommon except in cases of immunocompromise.
One must also consider other disease processes in the child who presents with abdominal pain, vomiting, or diarrhea. If any of these symptoms appears as an isolated chief complaint or the history is not consistent with sick exposures or ingestion of contaminated
food products, the differential diagnosis should be expanded to include other congenital or anatomical causes of the symptoms. Though not an exhaustive list, other differential diagnoses that should be considered for pediatric patients with isolated
vomiting should include inborn errors of metabolism, diabetic ketoacidosis, intussusception, pyloric stenosis, malrotation with volvulus, other bowel obstruction, migraine (including abdominal migraine), cyclic vomiting syndrome, cannabinoid hyperemesis
syndrome, and increased intracranial pressure. Prematurely or incorrectly diagnosing a child with gastroenteritis could lead to misdiagnosis and further morbidity or mortality.
Common Causes of Pediatric Gastroenteritis
Bacteria
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Campylobacter jejuni | 1-5 days | Diarrhea (may be bloody), cramps, fever, vomiting | 5-7 days (sometimes 10+ days), usually self-limiting | Poultry, unpasteurized milk, contaminated water | Routine stool culture. Requires special culture media to grow at 42 C Antigen PCR. | Supportive care. First-line treatment is azithromycin. Quinolones may be used as alternatives, though resistance rates for azithromycin and quinolones are both rising. Amoxicillin clavulanate may be another alternative in susceptible cases. Bacteremia and extra-intestinal manifestations may occur. Guillain-Barre syndrome and reactive arthritis can be sequelae. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Staphylococcus aureus (preformed toxin) | 1-6 hours | Sudden onset of severe nausea and vomiting, abdominal cramps. Diarrhea and fever may be present. | 1-3 days | Unrefrigerated or improperly refrigerated meats, potato and egg salads. | Clinical diagnosis. Routine stool culture can identify organism. | Supportive care. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Salmonella | 1-5 days | Diarrhea (possibly bloody), fever, vomiting, abdominal cramps. | 5-7 days | Contaminated eggs or poultry, reptiles/amphibians and birds, raw fruits and vegetables, oral-fecal route. | Routine stool cultures or PCR. | Supportive care. Antibiotics not indicated unless S. typhi or S. paratyphi with extra-intestinal spread. Consider amoxicillin, ceftriaxone, ciprofloxacin, or ampicillin, gentamicin, TMP-SMX or quinolones for non-typhoidal S. enterica. For S. enterica typhi or paratyphi, ceftriaxone or ciprofloxacin are first-line; ampicillin, azithromycin, and TMP-SMX are alternatives. Reactive arthritis and erythema nodosum can be sequelae |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
C. perfringens | 8-14 hours | Abdominal cramping, watery diarrhea, vomiting, fever. | 12-24 hours | Contaminated food ingestion | Stool culture. | Usually self-limiting. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
E. coli 0157:H7 & Shiga-toxin producing E. coli | 1-9 days | Severe diarrhea that is watery but often becomes bloody, abdominal pain and vomiting, little or no fever present (usually), more common in children under four years old. | 5-10 days | Undercooked beef, hamburger, unpasteurized milk or juice, raw fruits and vegetables, contaminated water, petting zoos. | Stool culture. 0157:H7 requires special culture media or PCR testing. | Supportive care. Monitor renal function, hemoglobin, and platelets closely. 0157:H7 can cause HUS. Antibiotics and antimotility agents may promote the development of HUS. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Shigella | 1-5 days | Abdominal cramps, fever, diarrhea. Stools may contain blood and mucus. | 5-7 days | Food or water contaminated with human feces, daycare, fecal-oral route. | Routine stool cultures or PCR. | Supportive care. Azithromycin, ceftriaxone, or ciprofloxacin are first-line; ampicillin or TMP-SMX are alternatives (if susceptible). Intestinal perforation, toxic megacolon, reactive arthritis, and erythema nodosum can be sequelae. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Yersinia | 4-6 days | Abdominal cramps, right lower quadrant abdominal pain that may mimic appendicitis, diarrhea with or without blood. | 10 days | Typically foodborne from raw/undercooked pork, unpasteurized milk, contaminated drinking water | Stool culture or PCR. | TMP-SMX is first-line; cefotaxime or ciprofloxacin are alternatives. Bacteremia and extra-intestinal manifestations may occur. Reactive arthritis and erythema nodosum can be sequelae. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Vibrio | 12-24 hours for non-cholerae; 2 hours-5 days for V. cholerae | Abdominal cramping, watery diarrhea (for V. cholerae, profuse diarrhea with "rice-water" stools). | 1-7 days | Fecal-oral route, ingestion of untreated drinking water, raw/undercooked fish and shellfish, person-to-person transmission is rare. | Stool culture, PCR, or RDT | Doxycycline is first-line for V. cholerae; azithromycin, ceftriaxone, and ciprofloxacin are alternatives. Non-cholerae Vibrio species are usually self-limiting. If invasive, consider ceftriaxone plus doxycycline as first-line (an aminoglycoside plus TMP-SMX is alternative). Live-attenuated oral vaccine is available for disease prevention of V. cholerae. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Enterotoxigenic E. coli | 1-5 days | Watery diarrhea, abdominal cramps, some vomiting. | 3-7+ days | Water or food contaminated with human feces. | Stool culture. ETEC requires special testing (PCR) for identification. | Supportive care, antibiotics rarely needed. TMP-SMX and quinolones recommended if indicated. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Clostridioides difficile toxin | Can appear weeks after antibiotic cessation | Watery diarrhea that can progress to severe colitis/toxic megacolon | Variable | Fecal-oral route, often associated with antibotic use. | PCR combined with toxin testing; institutional algorithms should be followed. | Antibiotic cessation, supportive care. Oral vancomycin or fidaxomicin (preferred over metronidazole). Antibiotics not indicated for asymptomatic colonization. |
Viral
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Norovirus and Sapovirus | 12-48 hours | Nausea, vomiting (more prevalent in children), abdominal cramping, diarrhea (more prevalent in adults), fever, myalgia, headache. | 1-3 days | Fecal-oral route and aerosolized vomit, contaminated food or water (shellfish), ready-to-eat foods. Highly contagious, common settings include cruise ships, daycares, and schools. | Clinical diagnosis, negative bacterial culture, stool negative for WBCs, PCR assays are available. | Supportive care, rehydration, good hygiene. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Rotavirus and enteric Adenovirus | 2-4 days | Vomiting, watery diarrhea, low-grade fever, temporary lactose intolerance. | 3-8 days | Fecal-contaminated foods, fomites, ready-to-eat foods. Aerosol transmission may be possible | Identification of virus in stool via PCR immunoassay. | Supportive care. Severe diarrhea may require fluid and electrolyte replacement. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
SARS-CoV-2 | 2-14 days | Acute COVID-19, fever, chills, cough, dyspnea, fatigue, myalgia, headache, sore throat, congestion, nausea, vomiting, diarrhea. MIS-C - fever, abdominal pain, vomiting, diarrhea, rash, conjunctivitis. | Acute symptoms less than 2 weeks, prolonged symptoms may last months (fatigue, anosmia, dysgeusia). | Respiratory aerosols and droplets. | PCR or antigen testing of nasal swabs. | Supportive care, rehydration, airborne precautions. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Hepatitis | 28 days average | Diarrhea, dark urine, jaundice, flu-like symptoms (fever, headache, nausea, abdominal pain). | 2 weeks-3 months | Shellfish, raw produce, contaminated drinking water. | Increase in ALT, bilirubin, positive IgM, anti-hepatitis A antibodies. | Supportive care, prevention with immunization. |
Parasites
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Giardia lamblia | 1-4 weeks | Diarrhea, stomach cramps, flatulence, weight loss. | 2-4 weeks | Uncooked food, contaminated water (hiking or camping). | Stool examination for ova and parasites (may need three samples), antigen testing or immunoassay. | Tinidazole or nitazoxanide are first-line; metronidazole is an alternative. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Cryptosporidium | 1-11 days | Diarrhea (usually watery), stomach cramps, bloating, flatulence, nausea, fever. | Remitting and relapsing for weeks to months. | Uncooked or contaminated food, drinking water. | Specific examination of stool for cryptosporidium, may need to examine food or water. Immunoassay and PCR available. | Supportive care, self-limited, consider nitazoxanide if severe. |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Cystoisospora | 1-2 days | Non-bloody diarrhea and crampy abdominal pain. | Variable | Travel to tropical climates, immunocompromised. | Examination of stool for oocysts, intestinal biopsy is sometimes required. | TMP-SMX is first-line; ciprofloxacin is second-line. TMP-SMX prophylaxis indicated for HIV patients with CD4 count <200/mm3 |
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Entamoeba histolytica | 2-4 weeks | Diarrhea (often bloody), frequent bowel movements, lower abdominal pain, dissemination to liver and other organs can occur. | Maybe protracted (several weeks to months) | Uncooked food or contaminated water, travel to tropical climate/areas with poor sanitation, MSM. | Examination of stool for cysts and parasites (may need at least three samples), immunoassay or PCR. Serology for long-term infections. | Metronidazole |
Fungi
Bacteria | Incubation | Signs and Symptoms | Duration | Associated Foods | Testing | Treatment |
Microsporidia | Up to 3 weeks | Watery, non-bloody diarrhea, abdominal cramping. In chronic cases, dehydration and failure to thrive. | Typically 2 weeks | HIV infection, not on ART, immunocompromised, travel, extremes of age. | Stool testing or intestinal biopsy. | ART for patients with HIV. Enterocytozoon bieneusi and Vittaforma corneae are also treated with fumagillin (not available in the US); other strains treated with albendazole. Disseminated infection may occur. |