Gastroenteritis

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Objectives

Upon finishing this module, the student will be able to:

  1. Identify the causative organisms of pediatric gastroenteritis.
  2. Investigate the presenting features of pediatric gastroenteritis.
  3. Describe levels of severity of dehydration and appropriate treatment.

 

Contributors

Update and Original Author: James Waymack, MD.

Update Editor: Jessica Pelletier, DO, MHPE.

Last Updated: November 2024

Introduction

Pediatric gastroenteritis is a common illness that accounts for many visits to the emergency department (ED). Gastroenteritis refers to a condition of inflammation of the stomach or intestines that is manifested as nausea, vomiting, or diarrhea, and is considered acute when present for less than two weeks. By definition, the diagnosis of gastroenteritis should be supported by historical components of both vomiting and diarrhea. While often a benign and self-limited illness, there can be severe morbidity and mortality associated with gastroenteritis.

Gastroenteritis can be due to viral, bacterial, or parasitic pathogens, most often transmitted via the fecal-oral route or via contaminated food or water. The most prevalent viral cause of gastroenteritis in children worldwide is rotavirus. Rotavirus has been on the decline due to increasing vaccination rates, and the most common viral etiology for gastroenteritis in the United States is now norovirus. Enteric adenoviruses are also quite common. 

The most common bacterial pathogen in developed countries is Campylobacter jejuni and other common pathogens (in order of prevalence) include Staphylococcus (S.) aureus, Salmonella, Clostridium (C.) perfringens, Shiga toxin producing E. coli (STEC), Shigella, Yersinia enterocolitica, non-cholera Vibrio species, and enterotoxigenic Escherichia coli. C. perfringens, Bacillus cereus, and S. aureus all cause illness via preformed toxins and are thus responsible for a more rapid onset of symptoms. Preformed toxins typically cause self-limited illness that lasts 24-48 hours. While C. difficile is considered the most common cause of antibiotic-induced diarrhea in adults it has historically been less common in pediatric patients. Of note, community-associated C. difficile infections have been on the rise in pediatric patients and should be considered in some cases. 

Parasitic causes of acute gastroenteritis may be due to Cryptosporidium parvum, Entamoeba histolytica and Giardia lamblia. Specific risk factors for parasitic gastroenteritis include travel to endemic areas, ingestion of unfiltered water, or immunocompromised status. Fungal gastronteritis is incredibly uncommon except in cases of immunocompromise.

One must also consider other disease processes in the child who presents with abdominal pain, vomiting, or diarrhea. If any of these symptoms appears as an isolated chief complaint or the history is not consistent with sick exposures or ingestion of contaminated food products, the differential diagnosis should be expanded to include other congenital or anatomical causes of the symptoms. Though not an exhaustive list, other differential diagnoses that should be considered for pediatric patients with isolated vomiting should include inborn errors of metabolism, diabetic ketoacidosis, intussusception, pyloric stenosis, malrotation with volvulus, other bowel obstruction, migraine (including abdominal migraine), cyclic vomiting syndrome, cannabinoid hyperemesis syndrome, and increased intracranial pressure. Prematurely or incorrectly diagnosing a child with gastroenteritis could lead to misdiagnosis and further morbidity or mortality.

Common Causes of Pediatric Gastroenteritis

Bacteria

BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Campylobacter jejuni1-5 daysDiarrhea (may be bloody), cramps, fever, vomiting5-7 days (sometimes 10+ days), usually self-limitingPoultry, unpasteurized milk, contaminated waterRoutine stool culture. Requires special culture media to grow at 42 C Antigen PCR.Supportive care. First-line treatment is azithromycin. Quinolones may be used as alternatives, though resistance rates for azithromycin and quinolones are both rising. Amoxicillin clavulanate may be another alternative in susceptible cases. Bacteremia and extra-intestinal manifestations may occur. Guillain-Barre syndrome and reactive arthritis can be sequelae.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Staphylococcus aureus (preformed toxin)1-6 hoursSudden onset of severe nausea and vomiting, abdominal cramps. Diarrhea and fever may be present.1-3 daysUnrefrigerated or improperly refrigerated meats, potato and egg salads.Clinical diagnosis. Routine stool culture can identify organism.Supportive care.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Salmonella1-5 daysDiarrhea (possibly bloody), fever, vomiting, abdominal cramps.5-7 daysContaminated eggs or poultry, reptiles/amphibians and birds, raw fruits and vegetables, oral-fecal route.Routine stool cultures or PCR.Supportive care. Antibiotics not indicated unless S. typhi or S. paratyphi with extra-intestinal spread. Consider amoxicillin, ceftriaxone, ciprofloxacin, or ampicillin, gentamicin, TMP-SMX or quinolones for non-typhoidal S. enterica. For S. enterica typhi or paratyphi, ceftriaxone or ciprofloxacin are first-line; ampicillin, azithromycin, and TMP-SMX are alternatives. Reactive arthritis and erythema nodosum can be sequelae
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
C. perfringens8-14 hoursAbdominal cramping, watery diarrhea, vomiting, fever.12-24 hoursContaminated food ingestionStool culture.Usually self-limiting.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
E. coli 0157:H7 & Shiga-toxin producing E. coli1-9 daysSevere diarrhea that is watery but often becomes bloody, abdominal pain and vomiting, little or no fever present (usually), more common in children under four years old.5-10 daysUndercooked beef, hamburger, unpasteurized milk or juice, raw fruits and vegetables, contaminated water, petting zoos.Stool culture. 0157:H7 requires special culture media or PCR testing.Supportive care. Monitor renal function, hemoglobin, and platelets closely. 0157:H7 can cause HUS. Antibiotics and antimotility agents may promote the development of HUS.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Shigella1-5 daysAbdominal cramps, fever, diarrhea. Stools may contain blood and mucus.5-7 daysFood or water contaminated with human feces, daycare, fecal-oral route.Routine stool cultures or PCR.Supportive care. Azithromycin, ceftriaxone, or ciprofloxacin are first-line; ampicillin or TMP-SMX are alternatives (if susceptible). Intestinal perforation, toxic megacolon, reactive arthritis, and erythema nodosum can be sequelae.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Yersinia4-6 daysAbdominal cramps, right lower quadrant abdominal pain that may mimic appendicitis, diarrhea with or without blood.10 daysTypically foodborne from raw/undercooked pork, unpasteurized milk, contaminated drinking waterStool culture or PCR.TMP-SMX is first-line; cefotaxime or ciprofloxacin are alternatives. Bacteremia and extra-intestinal manifestations may occur. Reactive arthritis and erythema nodosum can be sequelae.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Vibrio12-24 hours for non-cholerae; 2 hours-5 days for V. choleraeAbdominal cramping, watery diarrhea (for V. cholerae, profuse diarrhea with "rice-water" stools).1-7 daysFecal-oral route, ingestion of untreated drinking water, raw/undercooked fish and shellfish, person-to-person transmission is rare.Stool culture, PCR, or RDTDoxycycline is first-line for V. cholerae; azithromycin, ceftriaxone, and ciprofloxacin are alternatives. Non-cholerae Vibrio species are usually self-limiting. If invasive, consider ceftriaxone plus doxycycline as first-line (an aminoglycoside plus TMP-SMX is alternative). Live-attenuated oral vaccine is available for disease prevention of V. cholerae.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Enterotoxigenic E. coli1-5 daysWatery diarrhea, abdominal cramps, some vomiting.3-7+ daysWater or food contaminated with human feces.Stool culture. ETEC requires special testing (PCR) for identification.Supportive care, antibiotics rarely needed. TMP-SMX and quinolones recommended if indicated.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Clostridioides difficile toxinCan appear weeks after antibiotic cessationWatery diarrhea that can progress to severe colitis/toxic megacolonVariableFecal-oral route, often associated with antibotic use.PCR combined with toxin testing; institutional algorithms should be followed.Antibiotic cessation, supportive care. Oral vancomycin or fidaxomicin (preferred over metronidazole). Antibiotics not indicated for asymptomatic colonization.

Viral

BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Norovirus and Sapovirus12-48 hoursNausea, vomiting (more prevalent in children), abdominal cramping, diarrhea (more prevalent in adults), fever, myalgia, headache.1-3 daysFecal-oral route and aerosolized vomit, contaminated food or water (shellfish), ready-to-eat foods. Highly contagious, common settings include cruise ships, daycares, and schools.Clinical diagnosis, negative bacterial culture, stool negative for WBCs, PCR assays are available.Supportive care, rehydration, good hygiene.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Rotavirus and enteric Adenovirus2-4 daysVomiting, watery diarrhea, low-grade fever, temporary lactose intolerance.3-8 daysFecal-contaminated foods, fomites, ready-to-eat foods. Aerosol transmission may be possibleIdentification of virus in stool via PCR immunoassay.Supportive care. Severe diarrhea may require fluid and electrolyte replacement.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
SARS-CoV-22-14 daysAcute COVID-19, fever, chills, cough, dyspnea, fatigue, myalgia, headache, sore throat, congestion, nausea, vomiting, diarrhea. MIS-C - fever, abdominal pain, vomiting, diarrhea, rash, conjunctivitis.Acute symptoms less than 2 weeks, prolonged symptoms may last months (fatigue, anosmia, dysgeusia).Respiratory aerosols and droplets.PCR or antigen testing of nasal swabs.Supportive care, rehydration, airborne precautions.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Hepatitis28 days averageDiarrhea, dark urine, jaundice, flu-like symptoms (fever, headache, nausea, abdominal pain).2 weeks-3 monthsShellfish, raw produce, contaminated drinking water.Increase in ALT, bilirubin, positive IgM, anti-hepatitis A antibodies.Supportive care, prevention with immunization.

Parasites

BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Giardia lamblia1-4 weeksDiarrhea, stomach cramps, flatulence, weight loss.2-4 weeksUncooked food, contaminated water (hiking or camping).Stool examination for ova and parasites (may need three samples), antigen testing or immunoassay.Tinidazole or nitazoxanide are first-line; metronidazole is an alternative.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Cryptosporidium1-11 daysDiarrhea (usually watery), stomach cramps, bloating, flatulence, nausea, fever.Remitting and relapsing for weeks to months.Uncooked or contaminated food, drinking water.Specific examination of stool for cryptosporidium, may need to examine food or water. Immunoassay and PCR available.Supportive care, self-limited, consider nitazoxanide if severe.
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Cystoisospora1-2 daysNon-bloody diarrhea and crampy abdominal pain.VariableTravel to tropical climates, immunocompromised.Examination of stool for oocysts, intestinal biopsy is sometimes required.TMP-SMX is first-line; ciprofloxacin is second-line. TMP-SMX prophylaxis indicated for HIV patients with CD4 count <200/mm3
BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
Entamoeba histolytica2-4 weeksDiarrhea (often bloody), frequent bowel movements, lower abdominal pain, dissemination to liver and other organs can occur.Maybe protracted (several weeks to months)Uncooked food or contaminated water, travel to tropical climate/areas with poor sanitation, MSM.Examination of stool for cysts and parasites (may need at least three samples), immunoassay or PCR. Serology for long-term infections.Metronidazole

Fungi

BacteriaIncubationSigns and SymptomsDurationAssociated FoodsTestingTreatment
MicrosporidiaUp to 3 weeksWatery, non-bloody diarrhea, abdominal cramping. In chronic cases, dehydration and failure to thrive.Typically 2 weeksHIV infection, not on ART, immunocompromised, travel, extremes of age.Stool testing or intestinal biopsy.ART for patients with HIV. Enterocytozoon bieneusi and Vittaforma corneae are also treated with fumagillin (not available in the US); other strains treated with albendazole. Disseminated infection may occur.